2MBO K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl date
authors Castaneda, C.A., Fushman, D.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceUnique structural, dynamical, and functional properties of k11-linked polyubiquitin chains., Castaneda CA, Kashyap TR, Nakasone MA, Krueger S, Fushman D, Structure. 2013 Jul 2;21(7):1168-81. doi: 10.1016/j.str.2013.04.029. PMID:23823328
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (2mbo.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 2MBO
  • Original NMR restraints for 2MBO from PDB
  • Retrieve 2MBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MBO from S2C, [Save to disk]
    • View 2MBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MBO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MBO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mbo_A] [2mbo_B] [2mbo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MBO: [UBQ ] by SMART
    • Other resources with information on 2MBO
  • Community annotation for 2MBO at PDBWiki (http://pdbwiki.org)

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