2ME2 HIV-1 gp41 clade C Membrane Proximal External Region peptide in DPC micelle date
authors Sun, Z.J., Wagner, G., Reinherz, E.L., Kim, M., Song, L., Choi, J., Cheng, Y., Chowdhury, B., Bellot, G., Shih, W.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceDisruption of Helix-Capping Residues 671 and 674 Reveals a Role in HIV-1 Entry for a Specialized Hinge Segment of the Membrane Proximal External Region of gp41., Sun ZY, Cheng Y, Kim M, Song L, Choi J, Kudahl UJ, Brusic V, Chowdhury B, Yu L, Seaman MS, Bellot G, Shih WM, Wagner G, Reinherz EL, J Mol Biol. 2013 Sep 26. pii: S0022-2836(13)00614-1. doi:, 10.1016/j.jmb.2013.09.030. PMID:24075869
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2me2.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 2ME2
  • Original NMR restraints for 2ME2 from PDB
  • Retrieve 2ME2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ME2 from S2C, [Save to disk]
    • View 2ME2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ME2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ME2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2me2_A] [2me2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2ME2
  • Community annotation for 2ME2 at PDBWiki (http://pdbwiki.org)

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