2MJ2 Viral Protein date Dec 23, 2013
title Structure Of The Dimerization Domain Of The Human Polyoma, J Agnoprotein Is An Amphipathic Alpha-Helix.
authors P.Coric, S.A.Saribas, M.Abou-Gharbia, W.Childers, M.White, S.Boua M.Safak
compound source
Molecule: Agnoprotein
Chain: A
Fragment: Unp Residues 17-52
Synonym: Agno
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Jc Polyomavirus
Organism_common: Jcpyv
Organism_taxid: 10632
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEssential roles of Leu/Ile/Phe-rich domain of JC virus agnoprotein in dimer/oligomer formation, protein stability and splicing of viral transcripts., Sami Saribas A, Abou-Gharbia M, Childers W, Sariyer IK, White MK, Safak M, Virology. 2013 Aug 15;443(1):161-76. doi: 10.1016/j.virol.2013.05.003. Epub 2013 , Jun 6. PMID:23747198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (2mj2.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2MJ2
  • Original NMR restraints for 2MJ2 from PDB
  • Retrieve 2MJ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MJ2 from S2C, [Save to disk]
    • View 2MJ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MJ2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MJ2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mj2] [2mj2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2MJ2
  • Community annotation for 2MJ2 at PDBWiki (http://pdbwiki.org)

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