2MJ5	Protein Binding	date	Dec 25, 2013
title	Structure Of The Uba Domain Of Human Nbr1 In Complex With Ub
authors	E.Walinda, D.Morimoto, K.Sugase, M.Komatsu, H.Tochio, M.Shirakawa
compound		source
Molecule: Polyubiquitin-C Chain: A Fragment: Unp Residuses 1-76 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector: Pgex-6p1
Molecule: Next To Brca1 Gene 1 Protein Chain: B Fragment: Unp Residues 916-959 Synonym: Cell Migration-Inducing Gene 19 Protein, Membrane Chromosome 17 Surface Marker 2, Neighbor Of Brca1 Gene 1 Pr Protein 1a1-3b; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nbr1, 1a13b, Kiaa0049, M17s2, Mig19 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector: Pgex-6p1
method	Solution NMR
Gene Ontology	Chain Function Process Component B
Primary reference	Solution Structure of the Ubiquitin-associated (UBA) Domain of Human Autophagy Receptor NBR1 and its Interaction with Ubiquitin and Polyubiquitin., Walinda E, Morimoto D, Sugase K, Konuma T, Tochio H, Shirakawa M, J Biol Chem. 2014 Apr 1. PMID:24692539

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (2mj5.pdb1.gz) 34 Kb CSU: Contacts of Structural Units for 2MJ5 Original NMR restraints for 2MJ5 from PDB Retrieve 2MJ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2MJ5 from S2C, [Save to disk]

View 2MJ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2MJ5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2MJ5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2mj5_A] [2mj5_B] [2mj5] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 2MJ5: [UBQ ] by SMART

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