2MJZ Viral Protein date Jan 22, 2014
title Capsid Model Of M13 Bacteriophage Virus From Magic-Angle Spi And Rosetta Modeling
authors O.Morag, N.G.Sgourakis, D.Baker, A.Goldbourt
compound source
Molecule: Capsid Protein G8p
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, A, B, C, D, E, F, G, H, I;
Synonym: Coat Protein B, Gene 8 Protein, G8p, M13 Procoat, Protein;
Engineered: Yes
Organism_scientific: Enterobacteria Phage M13
Organism_taxid: 10870
Strain: M13ko7
Gene: Viii
methodSolid-State NMR
Gene
Ontology
ChainFunctionProcessComponent
S, a, T, N, K, d, Y, E, Z, g, e, J, W, B, H, c, b, D, I, G, U, F, V, Q, h, M, C, L, f, i, A, O, X, P, R


Primary referenceThe NMR-Rosetta capsid model of M13 bacteriophage reveals a quadrupled hydrophobic packing epitope., Morag O, Sgourakis NG, Baker D, Goldbourt A, Proc Natl Acad Sci U S A. 2015 Jan 27;112(4):971-6. doi: 10.1073/pnas.1415393112., Epub 2015 Jan 13. PMID:25587134
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1330 Kb) [Save to disk]
  • Biological Unit Coordinates (2mjz.pdb1.gz) 444 Kb
  • CSU: Contacts of Structural Units for 2MJZ
  • Original NMR restraints for 2MJZ from PDB
  • Retrieve 2MJZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MJZ from S2C, [Save to disk]
  • View 2MJZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MJZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MJZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mjz_M] [2mjz_J] [2mjz_S] [2mjz_X] [2mjz_T] [2mjz_i] [2mjz_C] [2mjz_O] [2mjz_K] [2mjz] [2mjz_V] [2mjz_Q] [2mjz_R] [2mjz_g] [2mjz_Z] [2mjz_U] [2mjz_d] [2mjz_b] [2mjz_h] [2mjz_L] [2mjz_F] [2mjz_N] [2mjz_G] [2mjz_Y] [2mjz_B] [2mjz_e] [2mjz_a] [2mjz_W] [2mjz_c] [2mjz_f] [2mjz_H] [2mjz_I] [2mjz_A] [2mjz_E] [2mjz_D] [2mjz_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MJZ
  • Community annotation for 2MJZ at PDBWiki (http://pdbwiki.org)

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