2MKB Viral Protein date Feb 04, 2014
title Structure Of Ns2(113-137) Gbvb Protein
authors R.Montserret, A.Martin, F.Penin
compound source
Molecule: Protease Ns2-3
Chain: A
Fragment: Unp Residues 845-869
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Hepatitis Gb Virus B
Organism_common: Gbv-B
Organism_taxid: 39113
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNS2 proteins of GB virus B and hepatitis C virus share common protease activities and membrane topologies., Boukadida C, Marnata C, Montserret R, Cohen L, Blumen B, Gouttenoire J, Moradpour D, Penin F, Martin A, J Virol. 2014 Apr 16. PMID:24741107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (2mkb.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 2MKB
  • Original NMR restraints for 2MKB from PDB
  • Retrieve 2MKB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MKB from S2C, [Save to disk]
    • View 2MKB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MKB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MKB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mkb_A] [2mkb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2MKB
  • Community annotation for 2MKB at PDBWiki (http://pdbwiki.org)

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