2MMT Antibiotic date Mar 18, 2014
title Lasso Peptide-Based Integrin Inhibitor: Microcin J25 Variant Substitution Of Gly12-Ile13-Gly14-Thr15
authors J.D.Hegemann, M.Zimmermann, T.A.Knappe, X.Xie, M.A.Marahiel
compound source
Molecule: Microcin J25 Rgdf Mutant
Chain: A
Fragment: Unp Residues 38-58
Synonym: Mccj25(Rgdf)
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
methodSolution NMR
Primary referenceRational Improvement of the Affinity and Selectivity of Integrin Binding of Grafted Lasso Peptides., Hegemann JD, De Simone M, Zimmermann M, Knappe TA, Xie X, Di Leva FS, Marinelli L, Novellino E, Zahler S, Kessler H, Marahiel MA, J Med Chem. 2014 Jun 27. PMID:24949551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2mmt.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 2MMT
  • Original NMR restraints for 2MMT from PDB
  • Retrieve 2MMT in mmCIF format [Save to disk]
  • View 2MMT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MMT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MMT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mmt] [2mmt_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MMT
  • Community annotation for 2MMT at PDBWiki (http://pdbwiki.org)

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