2MMW Antibiotic date Mar 20, 2014
title Lasso Peptide Based Integrin Inhibitor: Microcin J25 Variant Substitution Of Gly12-Ile13-Gly14
authors T.A.Knappe, U.Linne, X.Xie, M.A.Marahiel
compound source
Molecule: Microcin J25
Chain: A
Synonym: Mccj25
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceIntroducing lasso peptides as molecular scaffolds for drug design: engineering of an integrin antagonist., Knappe TA, Manzenrieder F, Mas-Moruno C, Linne U, Sasse F, Kessler H, Xie X, Marahiel MA, Angew Chem Int Ed Engl. 2011 Sep 5;50(37):8714-7. doi: 10.1002/anie.201102190., Epub 2011 Aug 2. PMID:21812076
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (2mmw.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 2MMW
  • Original NMR restraints for 2MMW from PDB
  • Retrieve 2MMW in mmCIF format [Save to disk]
  • View 2MMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MMW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MMW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mmw_A] [2mmw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MMW
  • Community annotation for 2MMW at PDBWiki (http://pdbwiki.org)

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