2MOM Structural insights of TM domain of LAMP-2A in DPC micelles date
authors Tjandra, N., Rout, A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of Transmembrane Domain of Lysosome-associated Membrane Protein Type 2a (LAMP-2A) Reveals Key Features for Substrate Specificity in Chaperone-mediated Autophagy., Rout AK, Strub MP, Piszczek G, Tjandra N, J Biol Chem. 2014 Dec 19;289(51):35111-23. doi: 10.1074/jbc.M114.609446. Epub, 2014 Oct 22. PMID:25342746
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (652 Kb) [Save to disk]
  • Biological Unit Coordinates (2mom.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2MOM
  • Original NMR restraints for 2MOM from PDB
  • Retrieve 2MOM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MOM from S2C, [Save to disk]
  • View 2MOM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MOM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MOM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mom_B] [2mom_A] [2mom] [2mom_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MOM
  • Community annotation for 2MOM at PDBWiki (http://pdbwiki.org)

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