2MP8 Antimicrobial Protein date May 13, 2014
title Nmr Structure Of Nkr-5-3b
authors K.J.Rosengren, D.J.Craik
compound source
Molecule: Nkr-5-3b
Chain: A
 Organism_scientific: Enterococcus Faecalis
Organism_taxid: 1351
Strain: Nkr-5-3
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification, Characterization, and Three-Dimensional Structure of the Novel Circular Bacteriocin, Enterocin NKR-5-3B, from Enterococcus faecium., Himeno K, Rosengren KJ, Inoue T, Perez RH, Colgrave ML, Lee HS, Chan LY, Henriques ST, Fujita K, Ishibashi N, Zendo T, Wilaipun P, Nakayama J, Leelawatcharamas V, Jikuya H, Craik DJ, Sonomoto K, Biochemistry. 2015 Aug 11;54(31):4863-76. doi: 10.1021/acs.biochem.5b00196. Epub , 2015 Jul 31. PMID:26174911
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]
  • Biological Unit Coordinates (2mp8.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 2MP8
  • Original NMR restraints for 2MP8 from PDB
  • Retrieve 2MP8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MP8 from S2C, [Save to disk]
    • View 2MP8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MP8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MP8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mp8] [2mp8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2MP8
  • Community annotation for 2MP8 at PDBWiki (http://pdbwiki.org)

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