2MPZ Atomic model of the Abeta D23N "Iowa" mutant using solid-state NMR, EM and Rosetta modeling date
authors Sgourakis, N.G., Qiang, W.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
S, F, a, T, N, K, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceModeling an in-register, parallel "iowa" abeta fibril structure using solid-state NMR data from labeled samples with rosetta., Sgourakis NG, Yau WM, Qiang W, Structure. 2015 Jan 6;23(1):216-27. doi: 10.1016/j.str.2014.10.022. Epub 2014 Dec, 24. PMID:25543257
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (894 Kb) [Save to disk]
  • Biological Unit Coordinates (2mpz.pdb1.gz) 179 Kb
  • CSU: Contacts of Structural Units for 2MPZ
  • Original NMR restraints for 2MPZ from PDB
  • Retrieve 2MPZ in mmCIF format [Save to disk]
    • View 2MPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MPZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MPZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mpz_R] [2mpz_L] [2mpz_Z] [2mpz_X] [2mpz] [2mpz_T] [2mpz_A] [2mpz_P] [2mpz_W] [2mpz_D] [2mpz_U] [2mpz_E] [2mpz_Y] [2mpz_M] [2mpz_J] [2mpz_N] [2mpz_B] [2mpz_K] [2mpz_G] [2mpz_C] [2mpz_a] [2mpz_V] [2mpz_Q] [2mpz_S] [2mpz_F] [2mpz_O] [2mpz_H] [2mpz_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2MPZ
  • Community annotation for 2MPZ at PDBWiki (http://pdbwiki.org)

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