2MXQ Antimicrobial Protein date Jan 12, 2015
title The Solution Structure Of Defa1, A Highly Potent Antimicrobi From The Horse
authors S.Jung, M.Michalek, M.Shomali, F.D.Soennichsen
compound source
Molecule: Paneth Cell-Specific Alpha-Defensin 1
Chain: A
Fragment: Residues 65-98
Engineered: Yes
Synthetic: Yes
Organism_scientific: Equus Caballus
Organism_common: Domestic Horse,Equine
Organism_taxid: 9796
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and functional studies of the highly potent equine antimicrobial peptide DEFA1., Michalek M, Jung S, Shomali MR, Cauchard S, Sonnichsen FD, Grotzinger J, Biochem Biophys Res Commun. 2015 Apr 17;459(4):668-72. doi:, 10.1016/j.bbrc.2015.02.168. Epub 2015 Mar 11. PMID:25769951
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (2mxq.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2MXQ
  • Original NMR restraints for 2MXQ from PDB
  • Retrieve 2MXQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MXQ from S2C, [Save to disk]
  • View 2MXQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MXQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MXQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mxq_A] [2mxq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2MXQ: [DEFSN ] by SMART
  • Other resources with information on 2MXQ
  • Community annotation for 2MXQ at PDBWiki (http://pdbwiki.org)

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