2MXU Protein Fibril date Jan 14, 2015
title 42-Residue Beta Amyloid Fibril
authors Y.Xiao, B.Ma, D.Mcelheny, S.Parthasarathy, F.Long, M.Hoshi, R.Nuss Y.Ishii
compound source
Molecule: Amyloid Beta A4 Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Unp Residues 672-713
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Chemically Synthesized With Fmoc Protected 1 15n-Labeled Amino Acids At Selected Sites
methodSolid-State NMR
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceAbeta(1-42) fibril structure illuminates self-recognition and replication of amyloid in Alzheimer's disease., Xiao Y, Ma B, McElheny D, Parthasarathy S, Long F, Hoshi M, Nussinov R, Ishii Y, Nat Struct Mol Biol. 2015 May 4. doi: 10.1038/nsmb.2991. PMID:25938662
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (964 Kb) [Save to disk]
  • Biological Unit Coordinates (2mxu.pdb1.gz) 97 Kb
  • CSU: Contacts of Structural Units for 2MXU
  • Original NMR restraints for 2MXU from PDB
  • Retrieve 2MXU in mmCIF format [Save to disk]
    • View 2MXU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2MXU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2MXU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mxu_K] [2mxu_B] [2mxu_C] [2mxu_J] [2mxu_L] [2mxu_I] [2mxu_F] [2mxu] [2mxu_G] [2mxu_A] [2mxu_D] [2mxu_H] [2mxu_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2MXU
  • Community annotation for 2MXU at PDBWiki (http://pdbwiki.org)

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