2N5Y Antimicrobial Protein date Aug 03, 2015
title Solution Nmr Structure Of Octyl-Tridecaptin A1 In Dpc Micell Containing Gram-Negative Lipid II
authors S.A.Cochrane, B.Findlay, A.Bakhtiary, E.M.Rodriguez-Lopez, J.C.V
compound source
Molecule: Octyl-Tridecaptin A1
Chain: A
Engineered: Yes
Synthetic: Yes
Other_details: Fmoc-Spps Synthesis
methodSolution NMR
ligand 28J, 4FO, 4N3, DAB, DSN, DTR enzyme
Primary referenceAntimicrobial lipopeptide tridecaptin A1 selectively binds to Gram-negative lipid II., Cochrane SA, Findlay B, Bakhtiary A, Acedo JZ, Rodriguez-Lopez EM, Mercier P, Vederas JC, Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11561-11566. Epub 2016 Sep 29. PMID:27688760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2n5y.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 2N5Y
  • CSU: Contacts of Structural Units for 2N5Y
  • Original NMR restraints for 2N5Y from PDB
  • Retrieve 2N5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N5Y from S2C, [Save to disk]
  • View 2N5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N5Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n5y_A] [2n5y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2N5Y
  • Community annotation for 2N5Y at PDBWiki (http://pdbwiki.org)

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