2N8D De Novo Protein, Antimicrobial Peptide date Oct 13, 2015
title In Silico Designed Antimicrobial Peptide Lavracin
authors M.Pillong, M.Blatter, G.Schneider
compound source
Molecule: Antimicrobial Peptide Lavracin
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR
ligand NH2 enzyme
Primary referenceRational Design of Membrane-Pore-Forming Peptides., Pillong M, Hiss JA, Schneider P, Lin YC, Posselt G, Pfeiffer B, Blatter M, Muller AT, Bachler S, Neuhaus CS, Dittrich PS, Altmann KH, Wessler S, Schneider G, Small. 2017 Aug 11. doi: 10.1002/smll.201701316. PMID:28799716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2n8d.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 2N8D
  • CSU: Contacts of Structural Units for 2N8D
  • Original NMR restraints for 2N8D from PDB
  • Retrieve 2N8D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2N8D from S2C, [Save to disk]
  • View 2N8D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2N8D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2n8d_A] [2n8d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2N8D
  • Community annotation for 2N8D at PDBWiki (http://pdbwiki.org)

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