2NDM Plant Protein date Jul 17, 2016
title Nmr Solution Structure Of Paws Derived Peptide 21 (Pdp-21)
authors B.Franke, A.S.Jayasena, M.F.Fisher, J.E.Swedberg, N.L.Taylor, J.S K.Rosengren
compound source
Molecule: Paws Derived Peptide 21
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Zinnia Haageana
Organism_taxid: 1525732
Other_details: Assembled By Fmoc Solid Phase Peptide Synthe Cyclised By Native Chemical Ligation.
methodSolution NMR
Primary referenceDiverse cyclic seed peptides in the Mexican zinnia (Zinnia haageana)., Franke B, Jayasena AS, Fisher MF, Swedberg JE, Taylor NL, Mylne JS, Rosengren KJ, Biopolymers. 2016 Nov;106(6):806-817. doi: 10.1002/bip.22901. PMID:27352920
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (2ndm.pdb1.gz) 4 Kb
  • CSU: Contacts of Structural Units for 2NDM
  • Original NMR restraints for 2NDM from PDB
  • Retrieve 2NDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NDM from S2C, [Save to disk]
  • View 2NDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NDM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ndm] [2ndm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2NDM
  • Community annotation for 2NDM at PDBWiki (http://pdbwiki.org)

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