2NMB Cell Cycle Gene Regulation date Oct 29, 1998
title Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide, N Ensemble Of Structures.
authors S.C.Li, C.Zwahlen, S.J.F.Vincent, C.J.Mcglade, T.Pawson, J.D.For
compound source
Molecule: Protein (Numb Protein)
Chain: A
Fragment: Ptb Domain
Engineered: Yes
 Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Numb
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_plasmid: Pgex4t2

Molecule: Protein (Gppy Peptide)
Chain: B
Engineered: Yes
Other_details: Chemically Synthesized
Synthetic: Yes
methodSolution NMR
ligand PTR enzyme
related structures by homologous chain: 1DDM
Primary referenceStructure of a Numb PTB domain-peptide complex suggests a basis for diverse binding specificity., Li SC, Zwahlen C, Vincent SJ, McGlade CJ, Kay LE, Pawson T, Forman-Kay JD, Nat Struct Biol 1998 Dec;5(12):1075-83. PMID:9846878
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (552 Kb) [Save to disk]
  • Biological Unit Coordinates (2nmb.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2NMB
  • CSU: Contacts of Structural Units for 2NMB
  • Original NMR restraints for 2NMB from PDB
  • Retrieve 2NMB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NMB from S2C, [Save to disk]
    • View 2NMB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NMB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NMB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2nmba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nmb] [2nmb_B] [2nmb_A]
  • SWISS-PROT database: [P16554]
  • Domain organization of [NUMB_DROME] by SWISSPFAM
  • Domain found in 2NMB: [PTB ] by SMART
    • Other resources with information on 2NMB
  • Community annotation for 2NMB at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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