2NO5 Hydrolase date Oct 24, 2006
title Crystal Structure Analysis Of A Dehalogenase With Intermedia
authors J.W.Schmidberger, M.C.J.Wilce
compound source
Molecule: (S)-2-Haloacid Dehalogenase Iva
Chain: A, B
Synonym: Dehalogenase, 2-Haloalkanoic Acid Dehalogenase Iva Haloacid Dehalogenase Iva, Halocarboxylic Acid Halidohydrol
Ec: 3.8.1.2
Engineered: Yes
Organism_scientific: Burkholderia Cepacia
Organism_taxid: 292
Strain: Mba4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phku201
symmetry Space Group: P 31 2 1
R_factor 0.196 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.743 103.743 134.794 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand ASL, CL, CNR, SO4 enzyme Hydrolase E.C.3.8.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of the substrate free-enzyme, and reaction intermediate of the HAD superfamily member, haloacid dehalogenase DehIVa from Burkholderia cepacia MBA4., Schmidberger JW, Wilce JA, Tsang JS, Wilce MC, J Mol Biol. 2007 May 4;368(3):706-17. Epub 2007 Feb 20. PMID:17368477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2no5.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (2no5.pdb2.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 2NO5
  • CSU: Contacts of Structural Units for 2NO5
  • Likely Quarternary Molecular Structure file(s) for 2NO5
  • Structure Factors (395 Kb)
  • Retrieve 2NO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NO5 from S2C, [Save to disk]
  • Re-refined 2no5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NO5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NO5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2no5_A] [2no5] [2no5_B]
  • SWISS-PROT database: [Q51645]
  • Domain organization of [HAD4_BURCE] by SWISSPFAM
  • Other resources with information on 2NO5
  • Community annotation for 2NO5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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