2NOI Hydrolase, Lyase Dna date Oct 25, 2006
title Structure Of G42a Human 8-Oxoguanine Glycosylase Crosslinked Undamaged G-Containing Dna
authors C.T.Radom, A.Banerjee, G.L.Verdine
compound source
Molecule: 5'-D(Gpgptpapgpapcpcptpgpgpapcpgpc
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Gpcpgptpccpapgpgptpcptpapcpc)
Chain: C
Engineered: Yes

Synthetic: Yes

Molecule: N-Glycosylasedna Lyase
Chain: A
Fragment: 8-Oxoguanine Dna Glycosylase, Dna-(Apurinic Or Ap Site) Lyase;
Synonym: Ap Lyase
Ec: 3.2.2.-, 4.2.99.18
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ogg1, Mmh, Mutm, Ogh1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a
symmetry Space Group: P 65 2 2
R_factor 0.226 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.888 91.888 211.835 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand CA enzyme Hydrolase E.C.3.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations., Radom CT, Banerjee A, Verdine GL, J Biol Chem. 2007 Mar 23;282(12):9182-94. Epub 2006 Nov 16. PMID:17114185
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2noi.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2NOI
  • CSU: Contacts of Structural Units for 2NOI
  • Likely Quarternary Molecular Structure file(s) for 2NOI
  • Structure Factors (305 Kb)
  • Retrieve 2NOI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NOI from S2C, [Save to disk]
  • Re-refined 2noi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NOI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NOI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NOI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2noi_C] [2noi_A] [2noi_B] [2noi]
  • SWISS-PROT database: [O15527]
  • Domain organization of [OGG1_HUMAN] by SWISSPFAM
  • Domain found in 2NOI: [ENDO3c ] by SMART
  • Other resources with information on 2NOI
  • Community annotation for 2NOI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science