2NOQ Ribosome date Oct 26, 2006
title Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna
authors M.Schuler, S.R.Connell, A.Lescoute, J.Giesebrecht, M.Dabrowski, B.Schroeer, T.Mielke, P.A.Penczek, E.Westhof, C.M.T.Spahn
compound source
Molecule: Crpv Ires
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: This Chain, Crpv-Ires-Rna [Ncbi Accession: B Was Synthesized By In-Vitro Transcription Of A Plasmid Temp

Molecule: 18s Ribosomal Rna
Chain: B
Fragment: Residues 500-545
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: 18s Ribosomal Rna
Chain: C
Fragment: Residues 1050-1062
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: 18s Ribosomal Rna
Chain: D
Fragment: Residues 1194-1208
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: 25s Ribosomal Rna
Chain: E
Synonym: S2, Ys8, Rp14
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: 40s Ribosomal Protein S5
Chain: F
Synonym: L10a
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: 60s Ribosomal Protein L1
Chain: G
Synonym: L16, Yl16, 39b, Rp39
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: 60s Ribosomal Protein L11-B
Chain: H
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.30 Å
Gene
Ontology
ChainFunctionProcessComponent
F


G

  • cytosolic large ribosomal su...
    • H

  • cytosolic large ribosomal su...
    • Primary referenceStructure of the ribosome-bound cricket paralysis virus IRES RNA., Schuler M, Connell SR, Lescoute A, Giesebrecht J, Dabrowski M, Schroeer B, Mielke T, Penczek PA, Westhof E, Spahn CM, Nat Struct Mol Biol. 2006 Dec;13(12):1092-6. Epub 2006 Nov 19. PMID:17115051
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (2noq.pdb1.gz) 191 Kb
  • CSU: Contacts of Structural Units for 2NOQ
  • Likely Quarternary Molecular Structure file(s) for 2NOQ
  • Retrieve 2NOQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NOQ from S2C, [Save to disk]
    • View 2NOQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NOQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NOQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2noq_B] [2noq_H] [2noq_A] [2noq_G] [2noq] [2noq_C] [2noq_D] [2noq_E] [2noq_F]
  • SWISS-PROT database: [Q3E757] [P53030] [P26783]
  • Domain organization of [RL11B_YEAST] [RL1_YEAST] [RS5_YEAST] by SWISSPFAM
    • Other resources with information on 2NOQ
  • Community annotation for 2NOQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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