2NPQ Transferase date Oct 29, 2006
title A Novel Lipid Binding Site In The P38 Alpha Map Kinase
authors R.Diskin, D.Engelberg, O.Livnah
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.607 74.212 74.571 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BOG enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA novel lipid binding site formed by the MAP kinase insert in p38 alpha., Diskin R, Engelberg D, Livnah O, J Mol Biol. 2008 Jan 4;375(1):70-9. Epub 2007 Sep 8. PMID:17999933
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2npq.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2NPQ
  • CSU: Contacts of Structural Units for 2NPQ
  • Likely Quarternary Molecular Structure file(s) for 2NPQ
  • Retrieve 2NPQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NPQ from S2C, [Save to disk]
  • View 2NPQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NPQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NPQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2npq] [2npq_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 2NPQ: [S_TKc ] by SMART
  • Other resources with information on 2NPQ
  • Community annotation for 2NPQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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