2NTD Hormone Growth Factor date Nov 07, 2006
title Human Fibroblast Growth Factor-1 (140 Amino Acid Form) With Cys117valpro134cys Mutations
authors V.K.Dubey, M.Blaber
compound source
Molecule: Acidic Fibroblast Growth Factor 1
Chain: A, B, C, D
Synonym: Heparin-Binding Growth Factor 1, Hbgf-1, Afgf, Bet Endothelial Cell Growth Factor, Ecgf- Beta;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf1, Fgfa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.173 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.600 108.330 60.920 90.00 104.97 90.00
method X-Ray Diffractionresolution 2.52 Å
ligand FMT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSpackling the Crack: Stabilizing Human Fibroblast Growth Factor-1 by Targeting the N and C terminus beta-Strand Interactions., Dubey VK, Lee J, Somasundaram T, Blaber S, Blaber M, J Mol Biol. 2007 Aug 3;371(1):256-68. Epub 2007 May 31. PMID:17570396
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (2ntd.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (2ntd.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (2ntd.pdb3.gz) 26 Kb
  • Biological Unit Coordinates (2ntd.pdb4.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 2NTD
  • CSU: Contacts of Structural Units for 2NTD
  • Likely Quarternary Molecular Structure file(s) for 2NTD
  • Structure Factors (454 Kb)
  • Retrieve 2NTD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NTD from S2C, [Save to disk]
  • Re-refined 2ntd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2NTD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2NTD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NTD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ntd] [2ntd_D] [2ntd_B] [2ntd_C] [2ntd_A]
  • SWISS-PROT database: [P05230]
  • Domain organization of [FGF1_HUMAN] by SWISSPFAM
  • Domain found in 2NTD: [FGF ] by SMART
    • Other resources with information on 2NTD
  • Community annotation for 2NTD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science