2NV2	Lyase Transferase	date	Nov 10, 2006
title	Structure Of The Plp Synthase Complex Pdx12 (Yaade) From B Subtilis
authors	M.Strohmeier, I.Tews, I.Sinning
compound		source
Molecule: Pyridoxal Biosynthesis Lyase Pdxs Chain: A, C, E, G, I, K, M, O, Q, S, U, W Synonym: Superoxide-Inducible Protein 7, Soi7, Pdx1 Ec: 4.-.-.- Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Strain: Strain 168 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 [De3] Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a, Petbspdx1
Molecule: Glutamine Amidotransferase Subunit Pdxt Chain: B, D, F, H, J, L, N, P, R, T, V, X Synonym: Glutamine Amidotransferase Glutaminase Subunit Pdx Ec: 2.6.-.- Engineered: Yes Mutation: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Strain: Strain 168 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 [De3] Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24b, Petbspdx2h170n-His6
symmetry	Space Group: P 1 21 1	R_factor 0.146 R_Free 0.198
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.507 259.009 144.962 90.00 92.13 90.00
method	X-Ray Diffraction	resolution	2.12 Å
ligand	CL, EDO, GLN	enzyme	Lyase E.C.4 BRENDA
Gene Ontology	Chain Function Process Component F, T, N, V, L, J, X, P, B, H, D, R S, K, E, Q, M, C, A, O, W, I, G, U
Primary reference	Structure of a bacterial pyridoxal 5'-phosphate synthase complex., Strohmeier M, Raschle T, Mazurkiewicz J, Rippe K, Sinning I, Fitzpatrick TB, Tews I, Proc Natl Acad Sci U S A. 2006 Dec 11;. PMID:17159152

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (955 Kb) [Save to disk] Biological Unit Coordinates (2nv2.pdb1.gz) 942 Kb LPC: Ligand-Protein Contacts for 2NV2 CSU: Contacts of Structural Units for 2NV2 Likely Quarternary Molecular Structure file(s) for 2NV2 Structure Factors (5785 Kb) Retrieve 2NV2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NV2 from S2C, [Save to disk] Re-refined 2nv2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NV2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NV2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NV2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nv2_H] [2nv2] [2nv2_J] [2nv2_X] [2nv2_O] [2nv2_S] [2nv2_V] [2nv2_K] [2nv2_F] [2nv2_T] [2nv2_M] [2nv2_D] [2nv2_G] [2nv2_L] [2nv2_P] [2nv2_E] [2nv2_A] [2nv2_R] [2nv2_Q] [2nv2_I] [2nv2_U] [2nv2_B] [2nv2_C] [2nv2_W] [2nv2_N] SWISS-PROT database: [P37527] [P37528] Domain organization of [PDXS_BACSU] [PDXT_BACSU] by SWISSPFAM

Other resources with information on 2NV2

Community annotation for 2NV2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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