2NV3 Viral Protein date Nov 10, 2006
title Solution Structure Of L8a Mutant Of Hiv-1 Myristoylated Matr
authors J.S.Saad, E.Loeliger, P.Luncsford, M.Liriano, J.Tai, A.Kim, J.Mill A.Joshi, E.O.Freed, M.F.Summers
compound source
Molecule: Gag Polyprotein
Chain: A
Fragment: Matrix Domain, Residues 2-132
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
methodSolution NMR
ligand MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePoint mutations in the HIV-1 matrix protein turn off the myristyl switch., Saad JS, Loeliger E, Luncsford P, Liriano M, Tai J, Kim A, Miller J, Joshi A, Freed EO, Summers MF, J Mol Biol. 2007 Feb 16;366(2):574-85. Epub 2006 Dec 1. PMID:17188710
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (806 Kb) [Save to disk]
  • Biological Unit Coordinates (2nv3.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2NV3
  • CSU: Contacts of Structural Units for 2NV3
  • Original NMR restraints for 2NV3 from PDB
  • Retrieve 2NV3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NV3 from S2C, [Save to disk]
  • View 2NV3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NV3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NV3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nv3] [2nv3_A]
  • SWISS-PROT database: [Q72497]
  • Domain organization of [Q72497_9HIV1] by SWISSPFAM
  • Other resources with information on 2NV3
  • Community annotation for 2NV3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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