2NWF Oxidoreductase date Nov 14, 2006
title Soluble Domain Of Rieske Iron Sulfur Protein
authors D.Kolling, J.S.Brunzelle, S.Lhee, A.R.Crofts, S.K.Nair
compound source
Molecule: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subu
Chain: A
Fragment: Residues 47-187
Synonym: Rieske Iron-Sulfur Protein, Risp
Ec: 1.10.2.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Peta, Fbcf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.124 R_Free 0.138
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.637 70.637 54.602 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand FES, GOL enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
note 2NWF is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAtomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters., Kolling DJ, Brunzelle JS, Lhee S, Crofts AR, Nair SK, Structure. 2007 Jan;15(1):29-38. PMID:17223530
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (2nwf.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 2NWF
  • CSU: Contacts of Structural Units for 2NWF
  • Likely Quarternary Molecular Structure file(s) for 2NWF
  • Structure Factors (767 Kb)
  • Retrieve 2NWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2NWF from S2C, [Save to disk]
  • Re-refined 2nwf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2NWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2NWF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2NWF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2nwf] [2nwf_A]
  • SWISS-PROT database: [Q02762]
  • Belongs to the photosynthetic reaction center (prc) family according to TCDB.
  • Domain organization of [UCRI_RHOSH] by SWISSPFAM
  • Other resources with information on 2NWF
  • Community annotation for 2NWF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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