2NYU	Transferase	date	Nov 21, 2006
title	Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein I With S-Adenosylmethionine
authors	A.Dong, H.Wu, H.Zeng, P.Loppnau, J.Weigelt, M.Sundstrom, C.H.Arrow A.M.Edwards, A.Bochkarev, A.N.Plotnikov, Structural Genomics C (Sgc)
compound		source
Molecule: Putative Ribosomal Rna Methyltransferase 2 Chain: A, B Fragment: Residues 51-246 Synonym: Rrna (Uridine-2'-O-)-Methyltransferase Ec: 2.1.1.- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ftsj2, Fjh1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Codon Plus Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: P28-Lic-Thrombin Derived From Pe
symmetry	Space Group: P 43	R_factor 0.226 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.022 102.022 37.068 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.76 Å
ligand	SAM	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (2nyu.pdb1.gz) 60 Kb Biological Unit Coordinates (2nyu.pdb2.gz) 60 Kb LPC: Ligand-Protein Contacts for 2NYU CSU: Contacts of Structural Units for 2NYU Likely Quarternary Molecular Structure file(s) for 2NYU Structure Factors (264 Kb) Retrieve 2NYU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2NYU from S2C, [Save to disk] Re-refined 2nyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2NYU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2NYU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2NYU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2nyu_A] [2nyu] [2nyu_B] SWISS-PROT database: [Q9UI43] Domain organization of [RRMJ2_HUMAN] by SWISSPFAM

Other resources with information on 2NYU

Community annotation for 2NYU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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