2O01 Photosynthesis date Nov 27, 2006
title The Structure Of A Plant Photosystem I Supercomplex At 3.4 A Resolution
authors A.Amunts, O.Drory, N.Nelson
compound source
Molecule: Photosystem I P700 Chlorophyll A Apoprotein A1
Chain: A
Synonym: Psaa, Psi-A
 Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
Strain: Alaska

Molecule: Photosystem I P700 Chlorophyll A Apoprotein A2
Chain: B
Synonym: Psab, Psi-B
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Photosystem I Iron-Sulfur Center
Chain: C
Synonym: Photosystem I Subunit Vii, 9 Kda Polypeptide, Psi-
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Photosystem I Reaction Center Subunit II, Chlorop
Chain: D
Synonym: Photosystem I 20 Kda Subunit, Psi-D
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem I Reaction Center Subunit Iv A, Chlor
Chain: E
Synonym: Psi-E A
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702

Molecule: Photosystem I Reaction Center Subunit III, Chloro
Chain: F
Synonym: Light-Harvesting Complex I 17 Kda Protein, Psi-F
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem I Reaction Center Subunit V, Chloropl
Chain: G
Synonym: Psi-G, Photosystem I 9 Kda Protein
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem I Reaction Center Subunit Vi, Chlorop
Chain: H
Synonym: Psi- H, Light-Harvesting Complex I 11 Kda Protein
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem I Reaction Center Subunit Viii
Chain: I
Synonym: Psi-I
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Photosystem I Reaction Center Subunit Ix
Chain: J
Synonym: Psi-J
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem I Reaction Center Subunit Psak, Chlor
Chain: K
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702

Molecule: Photosystem I Reaction Center Subunit Xi, Chlorop
Chain: L
Synonym: Psi- L, Psi Subunit V
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562

Molecule: Photosystem I-N Subunit
Chain: N
Organism_scientific: Phaseolus Vulgaris
Organism_taxid: 3885

Molecule: At3g54890
Chain: 1
Synonym: Chlorophyll Ab-Binding Protein, At3g54890f28p10_
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702

Molecule: Type II Chlorophyll Ab Binding Protein From Phot
Chain: 2
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888

Molecule: Psi Type III Chlorophyll Ab-Binding Protein
Chain: 3
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702

Molecule: Psi Light-Harvesting Antenna Chlorophyll Ab-Bind Protein;
Chain: 4
Organism_scientific: Pisum Sativum
Organism_common: Pea
Organism_taxid: 3888
symmetry Space Group: P 1 21 1
R_factor 0.348 R_Free 0.409
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.054 188.784 127.518 90.00 95.19 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand BCR, CLA, PQN, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
2, 1, 3, 4


A
  • electron transfer activity


    • B
  • electron transfer activity


    • C


    D


    E


    F


    G


    H


    I


    J


    L


    N


    Primary referenceThe structure of a plant photosystem I supercomplex at 3.4 A resolution., Amunts A, Drory O, Nelson N, Nature. 2007 May 3;447(7140):58-63. PMID:17476261
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (646 Kb) [Save to disk]
  • Biological Unit Coordinates (2o01.pdb1.gz) 587 Kb
  • LPC: Ligand-Protein Contacts for 2O01
  • CSU: Contacts of Structural Units for 2O01
  • Likely Quarternary Molecular Structure file(s) for 2O01
  • Structure Factors (789 Kb)
  • Retrieve 2O01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O01 from S2C, [Save to disk]
  • Re-refined 2o01 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O01
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O01, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o01_D] [2o01_C] [2o01_1] [2o01_A] [2o01_B] [2o01_N] [2o01_E] [2o01_J] [2o01_I] [2o01_G] [2o01_3] [2o01_2] [2o01_4] [2o01_K] [2o01_F] [2o01_L] [2o01_H] [2o01]
  • SWISS-PROT database: [Q9SQL2] [P05310] [P05311] [P10793] [P12353] [Q9S831] [P12355] [P12357] [P22179] [P17227] [P17230] [Q41385] [Q01667] [Q0WR83] [Q41038] [Q84U30]
  • Domain organization of [CB24_PEA] [PSAA_PEA] [PSAB_PEA] [PSAC_PEA] [PSAD_SPIOL] [PSAE1_ARATH] [PSAF_SPIOL] [PSAG_SPIOL] [PSAH_SPIOL] [PSAI_PEA] [PSAJ_SPIOL] [PSAL_SPIOL] [Q01667_ARATH] [Q0WR83_ARATH] [Q41038_PEA] [Q84U30_PHAVU] by SWISSPFAM
    • Other resources with information on 2O01
  • Community annotation for 2O01 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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