2O0K Hydrolase date Nov 27, 2006
title T4 Gp17 Atpase Domain Mutant
authors S.Sun, M.G.Rossmann
compound source
Molecule: Dna Packaging Protein Gp17
Chain: A
Fragment: N-Terminal Atpase Domain
Synonym: Terminase
Engineered: Yes
Mutation: Yes
Organism_scientific: Enterobacteria Phage T4
Organism_taxid: 10665
Gene: 17
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3(Plys)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.700 118.500 47.500 90.00 92.50 90.00
method X-Ray Diffractionresolution 2.50 Å
Primary referenceThe structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids., Sun S, Kondabagil K, Gentz PM, Rossmann MG, Rao VB, Mol Cell. 2007 Mar 23;25(6):943-9. PMID:17386269
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (2o0k.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 2O0K
  • Likely Quarternary Molecular Structure file(s) for 2O0K
  • Structure Factors (136 Kb)
  • Retrieve 2O0K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O0K from S2C, [Save to disk]
  • Re-refined 2o0k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O0K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O0K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O0K, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o0k_A] [2o0k]
  • SWISS-PROT database: [P17312]
  • Domain organization of [TERL_BPT4] by SWISSPFAM
  • Other resources with information on 2O0K
  • Community annotation for 2O0K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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