2O1J Viral Protein date Nov 29, 2006
title Structure Of The Extended Diarrhea-Inducing Domain Of Rotavi Enterotoxigenic Protein Nsp4
authors K.Suguna, C.Durga Rao, R.Deepa
compound source
Molecule: Nonstructural Protein Nsp4
Chain: A, B, C, D
Fragment: Diarrhea-Inducing Domain (Residues 95-146)
Engineered: Yes
Organism_scientific: Rotavirus Str.
Organism_taxid: 12578
Strain: I321
Gene: G10
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b+
symmetry Space Group: C 2 2 21
R_factor 0.248 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.614 180.432 48.691 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (2o1j.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 2O1J
  • CSU: Contacts of Structural Units for 2O1J
  • Structure Factors (92 Kb)
  • Retrieve 2O1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O1J from S2C, [Save to disk]
  • Re-refined 2o1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O1J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O1J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o1j_C] [2o1j] [2o1j_D] [2o1j_B] [2o1j_A]
  • SWISS-PROT database: [Q9PYC1]
  • Domain organization of [Q9PYC1_9REOV] by SWISSPFAM
  • Other resources with information on 2O1J
  • Community annotation for 2O1J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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