2O2H Hydrolase date Nov 29, 2006
title Crystal Structure Of Haloalkane Dehalogenase Rv2579 From Myc Tuberculosis Complexed With 1,2-Dichloroethane
authors P.A.Mazumdar, J.Hulecki, M.M.Cherney, C.R.Garen, M.N.G.James, Tb Structural Genomics Consortium (Tbsgc)
compound source
Molecule: Haloalkane Dehalogenase 3
Chain: A
Ec: 3.8.1.5
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Gene: Dhaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest-15
symmetry Space Group: C 2 2 21
R_factor 0.143 R_Free 0.173
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.120 64.460 134.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ACT, CL, DCE enzyme Hydrolase E.C.3.8.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2o2h.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 2O2H
  • CSU: Contacts of Structural Units for 2O2H
  • Structure Factors (278 Kb)
  • Retrieve 2O2H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O2H from S2C, [Save to disk]
  • Re-refined 2o2h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O2H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O2H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O2H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o2h] [2o2h_A]
  • SWISS-PROT database: [Q50642]
  • Domain organization of [DHAA_MYCTU] by SWISSPFAM
  • Other resources with information on 2O2H
  • Community annotation for 2O2H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science