2O2R Oxidoreductase date Nov 30, 2006
title Crystal Structure Of The C-Terminal Domain Of Rat 10'Formyltetrahydrofolate Dehydrogenase In Complex With Nad
authors Y.Tsybovsky, H.Donato, N.I.Krupenko, C.Davies, S.A.Krupenko
compound source
Molecule: Formyltetrahydrofolate Dehydrogenase
Chain: A, B, C, D
Fragment: C-Terminal Domain, Residues 397-902
Ec: 1.5.1.6
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Fthfd
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset-B
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
258.700 194.300 97.100 90.00 108.90 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL, NDP, SO4 enzyme Oxidoreductase E.C.1.5.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures of the carboxyl terminal domain of rat 10-formyltetrahydrofolate dehydrogenase: implications for the catalytic mechanism of aldehyde dehydrogenases., Tsybovsky Y, Donato H, Krupenko NI, Davies C, Krupenko SA, Biochemistry. 2007 Mar 20;46(11):2917-29. Epub 2007 Feb 16. PMID:17302434
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (334 Kb) [Save to disk]
  • Biological Unit Coordinates (2o2r.pdb1.gz) 327 Kb
  • Biological Unit Coordinates (2o2r.pdb2.gz) 648 Kb
  • LPC: Ligand-Protein Contacts for 2O2R
  • CSU: Contacts of Structural Units for 2O2R
  • Likely Quarternary Molecular Structure file(s) for 2O2R
  • Structure Factors (1854 Kb)
  • Retrieve 2O2R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O2R from S2C, [Save to disk]
  • Re-refined 2o2r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O2R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O2R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O2R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o2r_B] [2o2r_D] [2o2r_A] [2o2r_C] [2o2r]
  • SWISS-PROT database: [P28037] [Q5HZB2]
  • Domain organization of [FTHFD_RAT] [Q5HZB2_RAT] by SWISSPFAM
  • Other resources with information on 2O2R
  • Community annotation for 2O2R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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