2O3Z Hydrolase date Dec 02, 2006
title X-Ray Crystal Structure Of Lpxc Complexed With 3-Heptyloxybe
authors H.A.Gennadios, D.A.Whittington, D.W.Christianson
compound source
Molecule: Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase;
Chain: A, B
Synonym: Udp-3-O-Acyl-Glcnac Deacetylase
Ec: 3.5.1.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363
Gene: Lpxc, Enva
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 61
R_factor 0.197 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.006 101.006 122.674 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
ligand AI7, CL, SO4, ZN BindingDB enzyme Hydrolase E.C.3.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAmphipathic benzoic acid derivatives: Synthesis and binding in the hydrophobic tunnel of the zinc deacetylase LpxC., Shin H, Gennadios HA, Whittington DA, Christianson DW, Bioorg Med Chem. 2007 Jan 31;. PMID:17296300
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2o3z.pdb1.gz) 92 Kb
  • Biological Unit Coordinates (2o3z.pdb2.gz) 91 Kb
  • Biological Unit Coordinates (2o3z.pdb3.gz) 47 Kb
  • Biological Unit Coordinates (2o3z.pdb4.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 2O3Z
  • CSU: Contacts of Structural Units for 2O3Z
  • Likely Quarternary Molecular Structure file(s) for 2O3Z
  • Structure Factors (289 Kb)
  • Retrieve 2O3Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O3Z from S2C, [Save to disk]
  • Re-refined 2o3z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O3Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O3Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O3Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o3z_B] [2o3z_A] [2o3z]
  • SWISS-PROT database: [O67648]
  • Domain organization of [LPXC_AQUAE] by SWISSPFAM
    • Other resources with information on 2O3Z
  • Community annotation for 2O3Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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