2O4F Dna date Dec 04, 2006
title Structure Of A Parallel-Stranded Guanine Tetraplex Crystalli Monovalent Ions
authors C.Creze, B.Rinaldi, R.Haser, P.Bouvet, P.Gouet
compound source
Molecule: 5'-D(Tpgpgpgpgpt)-3'
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.920 57.370 35.920 90.00 108.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand LI, NA enzyme
Primary referenceStructure of a d(TGGGGT) quadruplex crystallized in the presence of Li+ ions., Creze C, Rinaldi B, Haser R, Bouvet P, Gouet P, Acta Crystallogr D Biol Crystallogr. 2007 Jun;63(Pt 6):682-8. Epub 2007, May 15. PMID:17505106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (2o4f.pdb1.gz) 13 Kb
  • Biological Unit Coordinates (2o4f.pdb2.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2O4F
  • CSU: Contacts of Structural Units for 2O4F
  • Likely Quarternary Molecular Structure file(s) for 2O4F
  • Structure Factors (164 Kb)
  • Retrieve 2O4F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O4F from S2C, [Save to disk]
  • Re-refined 2o4f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O4F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O4F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O4F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o4f_G] [2o4f_D] [2o4f_H] [2o4f_C] [2o4f_B] [2o4f_E] [2o4f_F] [2o4f] [2o4f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2O4F
  • Community annotation for 2O4F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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