2O4Z Lyase date Dec 05, 2006
title Crystal Structure Of The Carbonic Anhydrase II Complexed Wit Hydroxysulfamide Inhibitor
authors C.Temperini, J.Y.Winum, J.L.Montero, A.Scozzafava, C.T.Supuran
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Carbonate Dehydratase II, C Carbonic Anhydrase C;
Ec: 4.2.1.1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.208 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.100 41.390 72.300 90.00 104.38 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand HG, HSW, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCarbonic anhydrase inhibitors: The X-ray crystal structure of the adduct of N-hydroxysulfamide with isozyme II explains why this new zinc binding function is effective in the design of potent inhibitors., Temperini C, Winum JY, Montero JL, Scozzafava A, Supuran CT, Bioorg Med Chem Lett. 2007 May 15;17(10):2795-801. Epub 2007 Feb 28. PMID:17346964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2o4z.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2O4Z
  • CSU: Contacts of Structural Units for 2O4Z
  • Likely Quarternary Molecular Structure file(s) for 2O4Z
  • Structure Factors (247 Kb)
  • Retrieve 2O4Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O4Z from S2C, [Save to disk]
  • Re-refined 2o4z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O4Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O4Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O4Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o4z_A] [2o4z]
  • SWISS-PROT database: [P00918]
  • Domain organization of [CAH2_HUMAN] by SWISSPFAM
  • Domain found in 2O4Z: [Carb_anhydrase ] by SMART
  • Other resources with information on 2O4Z
  • Community annotation for 2O4Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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