2O8T Hydrolase date Dec 12, 2006
title Crystal Structure And Binding Epitopes Of Urokinase-Type Pla Activator (C122an145q) In Complex With Inhibitors
authors G.Zhao, C.Yuan, L.Jiang, Z.Huang, M.Huang
compound source
Molecule: Urokinase Plasminogen Activator
Chain: A
Fragment: Residues 16-250 (159-411)
Synonym: Upa
Ec: 3.4.21.73
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X-33
Expression_system_vector_type: Plasmid
Expression_system_vector: Selective
Expression_system_plasmid: Ppiczalphaa
symmetry Space Group: H 3
R_factor 0.242 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.910 120.910 42.610 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.45 Å
ligand 1PE, PEG, SO4 enzyme Hydrolase E.C.3.4.21.73 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2o8t.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2O8T
  • CSU: Contacts of Structural Units for 2O8T
  • Likely Quarternary Molecular Structure file(s) for 2O8T
  • Structure Factors (313 Kb)
  • Retrieve 2O8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O8T from S2C, [Save to disk]
  • Re-refined 2o8t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O8T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O8T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o8t] [2o8t_A]
  • SWISS-PROT database: [P00749]
  • Domain organization of [UROK_HUMAN] by SWISSPFAM
  • Domain found in 2O8T: [Tryp_SPc ] by SMART
  • Other resources with information on 2O8T
  • Community annotation for 2O8T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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