2O8U	Hydrolase	date	Dec 12, 2006
title	Crystal Structure And Binding Epitopes Of Urokinase-Type Pla Activator (C122an145qs195a) In Complex With Inhibitors
authors	G.Zhao, C.Yuan, L.Jiang, Z.Huang, M.Huang
compound		source
Molecule: Urokinase Plasminogen Activator Chain: A Fragment: Residues 16-250 (159-411) Synonym: Upa Ec: 3.4.21.73 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: X-33 Expression_system_vector_type: Plasmid Expression_system_vector: Selective Expression_system_plasmid: Ppiczalphaa
symmetry	Space Group: H 3	R_factor 0.218 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.073 120.073 42.252 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	BEN, PEG, PG4, SO4 BindingDB	enzyme	Hydrolase E.C.3.4.21.73 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (2o8u.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 2O8U CSU: Contacts of Structural Units for 2O8U Likely Quarternary Molecular Structure file(s) for 2O8U Structure Factors (204 Kb) Retrieve 2O8U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2O8U from S2C, [Save to disk] Re-refined 2o8u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2O8U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2O8U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2O8U, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2o8u] [2o8u_A] SWISS-PROT database: [P00749] Domain organization of [UROK_HUMAN] by SWISSPFAM Domain found in 2O8U: [Tryp_SPc ] by SMART

Other resources with information on 2O8U

Community annotation for 2O8U at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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