2O9J Hydrolase date Dec 13, 2006
title Crystal Structure Of Calcium Atpase With Bound Magnesium Flu Cyclopiazonic Acid
authors H.S.Young, K.A.Moncoq
compound source
Molecule: Sarcoplasmicendoplasmic Reticulum Calcium Atpase
Chain: A
Synonym: Calcium Pump 1, Serca1, Sr Ca2+, -Atpase 1, Calciu Transporting Atpase Sarcoplasmic Reticulum Type, Fast Twitc Muscle Isoform, Endoplasmic Reticulum Class 12 Ca2+, Atpas
Ec: 3.6.3.8
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
symmetry Space Group: C 1 2 1
R_factor 0.246 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
175.383 69.875 143.411 90.00 107.10 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand CZA, MF4, MG, NA enzyme Hydrolase E.C.3.6.3.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe molecular basis for cyclopiazonic acid inhibition of the sarcoplasmic reticulum calcium pump., Moncoq K, Trieber CA, Young HS, J Biol Chem. 2007 Mar 30;282(13):9748-57. Epub 2007 Jan 26. PMID:17259168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (2o9j.pdb1.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 2O9J
  • CSU: Contacts of Structural Units for 2O9J
  • Likely Quarternary Molecular Structure file(s) for 2O9J
  • Structure Factors (737 Kb)
  • Retrieve 2O9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O9J from S2C, [Save to disk]
  • Re-refined 2o9j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2O9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2O9J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O9J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o9j] [2o9j_A]
  • SWISS-PROT database: [P04191]
  • Belongs to the p-type atpase (p-atpase) superfamily according to TCDB.
  • Domain organization of [AT2A1_RABIT] by SWISSPFAM
  • Domain found in 2O9J: [Cation_ATPase_N ] by SMART
    • Other resources with information on 2O9J
  • Community annotation for 2O9J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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