2O9S Signaling Protein date Dec 14, 2006
title The Second Sh3 Domain From Ponsin
authors N.Pinotsis, M.Wilmanns
compound source
Molecule: Ponsin
Chain: A
Fragment: Src Homology 3 (Sh3) Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sorbs1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.743 36.562 69.124 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.83 Å
ligand CL, NA, SCN enzyme
note 2O9S is a representative structure
Primary referencePaxillin and ponsin interact in nascent costameres of muscle cells., Gehmlich K, Pinotsis N, Hayess K, van der Ven PF, Milting H, El Banayosy A, Korfer R, Wilmanns M, Ehler E, Furst DO, J Mol Biol. 2007 Jun 8;369(3):665-82. Epub 2007 Mar 24. PMID:17462669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2o9s.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2O9S
  • CSU: Contacts of Structural Units for 2O9S
  • Likely Quarternary Molecular Structure file(s) for 2O9S
  • Structure Factors (575 Kb)
  • Retrieve 2O9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2O9S from S2C, [Save to disk]
  • Re-refined 2o9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2O9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2O9S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2O9S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2o9s] [2o9s_A]
  • SWISS-PROT database: [A0AED4] [Q9BX66]
  • Domain organization of [A0AED4_HUMAN] [SRBS1_HUMAN] by SWISSPFAM
  • Domain found in 2O9S: [SH3 ] by SMART
  • Other resources with information on 2O9S
  • Community annotation for 2O9S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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