2OAE Hydrolase date Dec 15, 2006
title Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With T Based Peptide Mimetic #31
authors K.L.Longenecker, Q.Shuai, J.Patel, P.Wiedeman
compound source
Molecule: Dipeptidyl Peptidase 4
Chain: A, B
Fragment: Soluble Form: Residues 37-767
Synonym: Dipeptidyl Peptidase Iv, Dpp Iv, T-Cell Activation Cd26, Gp110 Glycoprotein, Bile Canaliculus Domain-Specific Glycoprotein;
Ec: 3.4.14.5
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
symmetry Space Group: P 21 3
R_factor 0.249 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
208.349 208.349 208.349 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand AIL, SO4 enzyme Hydrolase E.C.3.4.14.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • virus receptor activity
  • chemorepellent activity


  • Primary referencePyrrolidine-constrained phenethylamines: The design of potent, selective, and pharmacologically efficacious dipeptidyl peptidase IV (DPP4) inhibitors from a lead-like screening hit., Backes BJ, Longenecker K, Hamilton GL, Stewart K, Lai C, Kopecka H, von Geldern TW, Madar DJ, Pei Z, Lubben TH, Zinker BA, Tian Z, Ballaron SJ, Stashko MA, Mika AK, Beno DW, Kempf-Grote AJ, Black-Schaefer C, Sham HL, Trevillyan JM, Bioorg Med Chem Lett. 2007 Jan 19;. PMID:17276063
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (2oae.pdb1.gz) 219 Kb
  • Biological Unit Coordinates (2oae.pdb2.gz) 646 Kb
  • LPC: Ligand-Protein Contacts for 2OAE
  • CSU: Contacts of Structural Units for 2OAE
  • Likely Quarternary Molecular Structure file(s) for 2OAE
  • Structure Factors (540 Kb)
  • Retrieve 2OAE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OAE from S2C, [Save to disk]
  • Re-refined 2oae structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OAE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OAE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OAE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oae_B] [2oae_A] [2oae]
  • SWISS-PROT database: [P14740]
  • Domain organization of [DPP4_RAT] by SWISSPFAM
  • Other resources with information on 2OAE
  • Community annotation for 2OAE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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