2OB2	Transferase	date	Dec 18, 2006
title	Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
authors	M.R.Groves, I.B.Mueller, X.Kreplin, J.Mueller-Dieckmann
compound		source
Molecule: Leucine Carboxyl Methyltransferase 1 Chain: A, B, C Synonym: Protein Phosphatase Methyltransferase 1 Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Ppm1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Petm11
symmetry	Space Group: P 65	R_factor 0.206 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.620 110.620 161.940 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.92 Å
ligand	GOL, PO4, SAH, SMC	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	A method for the general identification of protein crystals in crystallization experiments using a noncovalent fluorescent dye., Groves MR, Muller IB, Kreplin X, Muller-Dieckmann J, Acta Crystallogr D Biol Crystallogr. 2007 Apr;63(Pt 4):526-35. Epub 2007, Mar 16. PMID:17372358

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk] Biological Unit Coordinates (2ob2.pdb1.gz) 60 Kb Biological Unit Coordinates (2ob2.pdb2.gz) 59 Kb Biological Unit Coordinates (2ob2.pdb3.gz) 58 Kb LPC: Ligand-Protein Contacts for 2OB2 CSU: Contacts of Structural Units for 2OB2 Likely Quarternary Molecular Structure file(s) for 2OB2 Structure Factors (697 Kb) Retrieve 2OB2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OB2 from S2C, [Save to disk] Re-refined 2ob2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OB2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OB2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OB2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1a2ob2, region B:141-347 [Jmol] [rasmolscript] [script source]     - Domain d1d2ob2, region B:625-721 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ob2_C] [2ob2_A] [2ob2] [2ob2_B] SWISS-PROT database: [Q04081] Domain organization of [LCMT1_YEAST] by SWISSPFAM

Other resources with information on 2OB2

Community annotation for 2OB2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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