2OCH Chaperone date Dec 20, 2006
title J-Domain Of Dnj-12 From Caenorhabditis Elegans
authors J.Osipiuk, N.Maltseva, M.Gu, C.Voisine, R.I.Morimoto, A.Joachimia Center For Structural Genomics (Mcsg)
compound source
Molecule: Hypothetical Protein Dnj-12
Chain: A
Fragment: Residues 1-70
Engineered: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: Dnj-12
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: I 21 21 21
R_factor 0.219 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.664 51.758 85.803 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.86 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (2och.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2OCH
  • Likely Quarternary Molecular Structure file(s) for 2OCH
  • Structure Factors (55 Kb)
  • Retrieve 2OCH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OCH from S2C, [Save to disk]
  • Re-refined 2och structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OCH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OCH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OCH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2och_A] [2och]
  • SWISS-PROT database: [O45502]
  • Domain organization of [O45502_CAEEL] by SWISSPFAM
  • Domain found in 2OCH: [DnaJ ] by SMART
    • Other resources with information on 2OCH
  • Community annotation for 2OCH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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