2OFI 3-Methyladenine Dna Glycosylase I Dna date Jan 03, 2007
title Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Dna3ma
authors A.H.Metz, T.Hollis, B.F.Eichman
compound source
Molecule: 5'-D(Cpgpgpapcptp(3dr)Papcpgpgpg)-3'
Chain: C
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Cpcpgptptpapgptpcpcpgpc)-3'
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: 3-Methyladenine Dna Glycosylase I, Constitutive
Chain: A
Synonym: 3-Methyladenine Dna Glycosylase I
Engineered: Yes
Organism_scientific: Salmonella Typhi
Organism_taxid: 601
Gene: Tag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet19b
symmetry Space Group: P 63
R_factor 0.176 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.963 101.963 55.461 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand 3DR, ADK, MSE, NA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG)., Metz AH, Hollis T, Eichman BF, EMBO J. 2007 May 2;26(9):2411-20. Epub 2007 Apr 5. PMID:17410210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2ofi.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2OFI
  • CSU: Contacts of Structural Units for 2OFI
  • Likely Quarternary Molecular Structure file(s) for 2OFI
  • Structure Factors (201 Kb)
  • Retrieve 2OFI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OFI from S2C, [Save to disk]
  • Re-refined 2ofi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2OFI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2OFI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OFI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ofi_B] [2ofi] [2ofi_A] [2ofi_C]
  • SWISS-PROT database: [Q8Z2A5]
  • Domain organization of [Q8Z2A5_SALTI] by SWISSPFAM
    • Other resources with information on 2OFI
  • Community annotation for 2OFI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science