2OFY Transcription date Jan 04, 2007
title Crystal Structure Of Putative Xre-Family Transcriptional Reg From Rhodococcus Sp.
authors I.A.Shumilin, T.Skarina, O.Onopriyenko, V.Yim, M.Chruszcz, M.Cymb A.Savchenko, A.Edwards, A.Joachimiak, W.Minor, Midwest Center F Structural Genomics (Mcsg)
compound source
Molecule: Putative Xre-Family Transcriptional Regulator
Chain: A, B
Engineered: Yes
Organism_scientific: Rhodococcus Sp.
Organism_taxid: 101510
Strain: Rha1
Gene: Rha1_ro04071
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tv
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.540 46.073 81.842 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MSE enzyme
note 2OFY is a representative structure
Gene RHA1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2ofy.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2OFY
  • CSU: Contacts of Structural Units for 2OFY
  • Likely Quarternary Molecular Structure file(s) for 2OFY
  • Structure Factors (304 Kb)
  • Retrieve 2OFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OFY from S2C, [Save to disk]
  • Re-refined 2ofy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OFY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OFY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ofy_A] [2ofy] [2ofy_B]
  • SWISS-PROT database: [Q0S9B8]
  • Domain organization of [Q0S9B8_RHOSR] by SWISSPFAM
  • Domain found in 2OFY: [HTH_XRE ] by SMART
  • Other resources with information on 2OFY
  • Community annotation for 2OFY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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