2OG7 Oxidoreductase, Electron Transport date Jan 05, 2007
title Cystal Structure Of Asparagine Oxygenase In Complex With Fe( 3s-3-Hydroxyasparagine And Succinate
authors L.O.Essen, M.Strieker
compound source
Molecule: Asparagine Oxygenase
Chain: A
Synonym: Putative Oxygenase
Engineered: Yes
Organism_scientific: Streptomyces Coelicolor A3(2)
Organism_taxid: 100226
Strain: Dsmz 40783
Gene: Sco3236 (Asno)
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqtevms01
Other_details: Expression Plasmid Encodes For N-Terminal Hi For Imac
symmetry Space Group: P 31 2 1
R_factor 0.168 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.308 91.308 90.867 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.66 Å
ligand AHB, FE2, SIN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMechanistic and structural basis of stereospecific Cbeta-hydroxylation in calcium-dependent antibiotic, a daptomycin-type lipopeptide., Strieker M, Kopp F, Mahlert C, Essen LO, Marahiel MA, ACS Chem Biol. 2007 Mar 20;2(3):187-96. PMID:17373765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (2og7.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 2OG7
  • CSU: Contacts of Structural Units for 2OG7
  • Likely Quarternary Molecular Structure file(s) for 2OG7
  • Structure Factors (735 Kb)
  • Retrieve 2OG7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OG7 from S2C, [Save to disk]
  • Re-refined 2og7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OG7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OG7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OG7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2og7] [2og7_A]
  • SWISS-PROT database: [Q9Z4Z5]
  • Domain organization of [ASNO_STRCO] by SWISSPFAM
  • Other resources with information on 2OG7
  • Community annotation for 2OG7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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