2OGB	Ligase	date	Jan 05, 2007
title	Crystal Structure Of The C-Terminal Domain Of Mouse Nrdp1
authors	S.Bouyain, D.J.Leahy
compound		source
Molecule: Ring Finger Protein 41 Chain: A, B Fragment: Nrdp1 C-Terminal Domain Ec: 6.3.2.19 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: Rnf41 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet41
symmetry	Space Group: C 1 2 1	R_factor 0.212 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 157.427 58.227 37.387 90.00 101.53 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	GOL, MSE, SCN	enzyme	Ligase E.C.6.3.2.19 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-based mutagenesis of the substrate-recognition domain of Nrdp1/FLRF identifies the binding site for the receptor tyrosine kinase ErbB3., Bouyain S, Leahy DJ, Protein Sci. 2007 Apr;16(4):654-61. PMID:17384230

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (2ogb.pdb1.gz) 22 Kb Biological Unit Coordinates (2ogb.pdb2.gz) 22 Kb Biological Unit Coordinates (2ogb.pdb3.gz) 42 Kb LPC: Ligand-Protein Contacts for 2OGB CSU: Contacts of Structural Units for 2OGB Likely Quarternary Molecular Structure file(s) for 2OGB Structure Factors (995 Kb) Retrieve 2OGB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OGB from S2C, [Save to disk] Re-refined 2ogb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OGB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OGB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OGB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ogb_B] [2ogb_A] [2ogb] SWISS-PROT database: [Q8BH75] Domain organization of [RNF41_MOUSE] by SWISSPFAM

Other resources with information on 2OGB

Community annotation for 2OGB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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