2OGT Hydrolase date Jan 08, 2007
title Crystal Structure Of The Geobacillus Stearothermophilus Carboxylesterase Est55 At Ph 6.8
authors P.Liu, H.E.Ewis, P.C.Tai, C.D.Lu, I.T.Weber
compound source
Molecule: Thermostable Carboxylesterase Est50
Chain: A
Ec: 3.1.1.1
Engineered: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top 10
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.361 74.430 98.606 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand GOL, IOD enzyme Hydrolase E.C.3.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of the Geobacillus stearothermophilus Carboxylesterase Est55 and Its Activation of Prodrug CPT-11., Liu P, Ewis HE, Tai PC, Lu CD, Weber IT, J Mol Biol. 2006 Dec 30;. PMID:17239398
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (2ogt.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 2OGT
  • CSU: Contacts of Structural Units for 2OGT
  • Likely Quarternary Molecular Structure file(s) for 2OGT
  • Structure Factors (717 Kb)
  • Retrieve 2OGT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OGT from S2C, [Save to disk]
  • Re-refined 2ogt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OGT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OGT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OGT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ogt_A] [2ogt]
  • SWISS-PROT database: [Q8GCC7]
  • Domain organization of [Q8GCC7_BACST] by SWISSPFAM
  • Other resources with information on 2OGT
  • Community annotation for 2OGT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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