2OH2	Transferase Dna	date	Jan 09, 2007
title	Ternary Complex Of Human Dna Polymerase
authors	S.Lone, S.A.Townson, S.N.Uljon, S.Prakash, L.Prakash, A.K.Aggarwa
compound		source
Molecule: 5'-D(Gpgpggpgpapapgpgpapcpcpc)-3' Chain: S, P Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Tptcpcpapgpgpgptpcpcptptpcpcp 3'; Chain: Q, T Engineered: Yes		Synthetic: Yes
Molecule: Dna Polymerase Kappa Chain: A, B Synonym: Dinb Protein, Dinp Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Polk, Dinb1 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 Expression_system_strain: Bj5464
symmetry	Space Group: C 2 2 21	R_factor 0.231 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.150 152.472 217.389 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.05 Å
ligand	MG, TTP	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (2oh2.pdb1.gz) 71 Kb Biological Unit Coordinates (2oh2.pdb2.gz) 74 Kb LPC: Ligand-Protein Contacts for 2OH2 CSU: Contacts of Structural Units for 2OH2 Likely Quarternary Molecular Structure file(s) for 2OH2 Structure Factors (305 Kb) Retrieve 2OH2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OH2 from S2C, [Save to disk] Re-refined 2oh2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OH2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OH2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OH2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oh2] [2oh2_Q] [2oh2_T] [2oh2_B] [2oh2_P] [2oh2_S] [2oh2_A] SWISS-PROT database: [Q9UBT6] Domain organization of [POLK_HUMAN] by SWISSPFAM

Other resources with information on 2OH2

Community annotation for 2OH2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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