2OHP Hydrolase date Jan 10, 2007
title X-Ray Crystal Structure Of Beta Secretase Complexed With Com
authors S.Patel
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Protease Domain
Synonym: Beta-Site App Cleaving Enzyme 1, Beta-Site Amyloid Protein Cleaving Enzyme 1, Membrane-Associated Aspartic Pro Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 61 2 2
R_factor 0.232 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.541 102.541 169.062 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
ligand 6IP, DMS, IOD BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceApplication of Fragment Screening by X-ray Crystallography to the Discovery of Aminopyridines as Inhibitors of beta-Secretase., Congreve M, Aharony D, Albert J, Callaghan O, Campbell J, Carr RA, Chessari G, Cowan S, Edwards PD, Frederickson M, McMenamin R, Murray CW, Patel S, Wallis N, J Med Chem. 2007 Feb 22;. PMID:17315857
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (2ohp.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 2OHP
  • CSU: Contacts of Structural Units for 2OHP
  • Likely Quarternary Molecular Structure file(s) for 2OHP
  • Structure Factors (201 Kb)
  • Retrieve 2OHP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OHP from S2C, [Save to disk]
  • Re-refined 2ohp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OHP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OHP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OHP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ohp] [2ohp_A]
  • SWISS-PROT database: [P56817]
  • Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB.
  • Domain organization of [BACE1_HUMAN] by SWISSPFAM
  • Other resources with information on 2OHP
  • Community annotation for 2OHP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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