2OIG Hydrolase date Jan 11, 2007
title Crystal Structure Of Rs21-C6 Core Segment And Dm5ctp Complex
authors B.Wu, Y.Liu, Q.Zhao, S.Liao, J.Zhang, M.Bartlam, W.Chen, Z.Rao
compound source
Molecule: Rs21-C6
Chain: A, B, C, D
Fragment: Core Segment, Residues 21-126
Synonym: Riken Cdna 2410015n17 Gene, Es Cells Cdna, Riken F
Enriched Library, Clone: 2410029l09 Product:Rs21-C6 Homolog,
Cdna, Riken Full-Length Enriched Library, Clone: 2410015n17
Product: Hypothetical Protein, Full Insert Sequence, 18-Day
Whole Body Cdna, Riken Full-Length Enriched Library, Clone
Product: Rs21-C6 2410015n17rik Protein, Riken Cdna 2410015n1 Full Insert Sequence, Rscut;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.188 81.883 87.123 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand 523 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal Structure of RS21-C6, Involved in Nucleoside Triphosphate Pyrophosphohydrolysis., Wu B, Liu Y, Zhao Q, Liao S, Zhang J, Bartlam M, Chen W, Rao Z, J Mol Biol. 2007 Jan 26;. PMID:17320107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (2oig.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 2OIG
  • CSU: Contacts of Structural Units for 2OIG
  • Likely Quarternary Molecular Structure file(s) for 2OIG
  • Structure Factors (73 Kb)
  • Retrieve 2OIG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2OIG from S2C, [Save to disk]
  • Re-refined 2oig structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2OIG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2OIG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2OIG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2oig_A] [2oig_B] [2oig] [2oig_D] [2oig_C]
  • SWISS-PROT database: [Q9QY93]
  • Domain organization of [DCTP1_MOUSE] by SWISSPFAM
  • Other resources with information on 2OIG
  • Community annotation for 2OIG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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