2OJ9	Transferase	date	Jan 12, 2007
title	Structure Of Igf-1r Kinase Domain Complexed With A Benzimida Inhibitor
authors	J.S.Sack, B.L.Jacobson
compound		source
Molecule: Insulin-Like Growth Factor 1 Receptor Precursor ( 2.7.10.1) (Insulin-Like Growth Factor I Receptor) (Igf-I Re (Cd221 Antigen); Chain: A Fragment: Kinase Domain, Residues 982-1286 Synonym: Cd221 Antigen, Igf1r Ec: 2.7.1.112 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Igf1r Expression_system: Unidentified Baculovirus Expression_system_taxid: 10469 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.214 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.271 44.289 65.744 90.00 99.05 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	BMI BindingDB	enzyme	Transferase E.C.2.7.1.112 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery and initial SAR of 3-(1H-benzo[d]imidazol-2-yl)pyridin-2(1H)-ones as inhibitors of insulin-like growth factor 1-receptor (IGF-1R)., Velaparthi U, Wittman M, Liu P, Stoffan K, Zimmermann K, Sang X, Carboni J, Li A, Attar R, Gottardis M, Greer A, Chang CY, Jacobsen BL, Sack JS, Sun Y, Langley DR, Balasubramanian B, Vyas D, Bioorg Med Chem Lett. 2007 Apr 15;17(8):2317-21. Epub 2007 Feb 4. PMID:17317169

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (2oj9.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 2OJ9 CSU: Contacts of Structural Units for 2OJ9 Likely Quarternary Molecular Structure file(s) for 2OJ9 Structure Factors (157 Kb) Retrieve 2OJ9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2OJ9 from S2C, [Save to disk] Re-refined 2oj9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2OJ9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2OJ9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2OJ9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2oj9_A] [2oj9] SWISS-PROT database: [P08069] Domain organization of [IGF1R_HUMAN] by SWISSPFAM Domain found in 2OJ9: [TyrKc ] by SMART

Other resources with information on 2OJ9

Community annotation for 2OJ9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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